Debate: Seeds as Deep Time Technologies.

This essay theorizes crop seeds as deep time technologies, surveying a range of materialist approaches to the study of agriculture, from historical materialism to agroecology and actor-network theory. Recent studies of plant domestication suggest that the long history of human-plant relations and agrarian knowledge defy the reduction of seeds to products of nature or objects of property. Approaching seeds as technologies allows us to understand the actors and processes of improvement that demarcate biological material according to commercial and scientific logics. Framing seeds as a collaborative technological project with a 19,000-year history unseats industrial time as the dominant frame in the history of technology. It recasts political economy not simply as a construction of human social relations of production but also as it imagines the material used to produce life itself.

Agriculture along the upper part of the Middle Zarafshan River during the first millennium AD: A multi-site archaeobotanical analysis.

The Zarafshan River runs from the mountains of Tajikistan and terminates in the sands of the Kyzyl-Kum Desert in Uzbekistan; it served as a communication route and homeland for the Sogdians. The Sogdians are historically depicted as merchants existing from the end of the first millennium BC through the first millennium AD. While recent research has provided the first glimpse into cultivation, commerce, communication, and consumption in the Lower Zarafshan, the agricultural heartland of the Middle Zarafshan Basin has remained unstudied. This paper presents the results of archaeobotanical investigations conducted at five ancient urban sites/areas spanning the fifth to the twelfth centuries AD: Kainar (Penjikent citadel), Penjikent (shahristan), Sanjar-Shah, Kuk-Tosh (pre-Mongol Penjikent), and Afrasiab. Collectively, these data show that cereals, legumes, oil/fiber crops, fruits, and nuts were cultivated on the fertile Zarafshan floodplains. In this paper, we discuss evidence for the diversification of the agricultural assemblage over time, including the introduction of new staple crops and fruits into an already complex cultivation system. In addition, we contrast our data with previously published results from sites along the course of the Zarafshan to determine whether there is a dietary difference between pre-and post-Islamic conquest periods at settlements located along the river.

Vittrup Man-The life-history of a genetic foreigner in Neolithic Denmark.

The lethally maltreated body of Vittrup Man was deposited in a Danish bog, probably as part of a ritualised sacrifice. It happened between c. 3300 and 3100 cal years BC, i.e., during the period of the local farming-based Funnel Beaker Culture. In terms of skull morphological features, he differs from the majority of the contemporaneous farmers found in Denmark, and associates with hunter-gatherers, who inhabited Scandinavia during the previous millennia. His skeletal remains were selected for transdisciplinary analysis to reveal his life-history in terms of a population historical perspective. We report the combined results of an integrated set of genetic, isotopic, physical anthropological and archaeological analytical approaches. Strontium signature suggests a foreign birthplace that could be in Norway or Sweden. In addition, enamel oxygen isotope values indicate that as a child he lived in a colder climate, i.e., to the north of the regions inhabited by farmers. Genomic data in fact demonstrates that he is closely related to Mesolithic humans known from Norway and Sweden. Moreover, dietary stable isotope analyses on enamel and bone collagen demonstrate a fisher-hunter way of life in his childhood and a diet typical of farmers later on. Such a variable life-history is also reflected by proteomic analysis of hardened organic deposits on his teeth, indicating the consumption of forager food (seal, whale and marine fish) as well as farmer food (sheep/goat). From a dietary isotopic transect of one of his teeth it is shown that his transfer between societies of foragers and farmers took place near to the end of his teenage years.

The selection landscape and genetic legacy of ancient Eurasians.

The Holocene (beginning around 12,000 years ago) encompassed some of the most significant changes in human evolution, with far-reaching consequences for the dietary, physical and mental health of present-day populations. Using a dataset of more than 1,600 imputed ancient genomes1, we modelled the selection landscape during the transition from hunting and gathering, to farming and pastoralism across West Eurasia. We identify key selection signals related to metabolism, including that selection at the FADS cluster began earlier than previously reported and that selection near the LCT locus predates the emergence of the lactase persistence allele by thousands of years. We also find strong selection in the HLA region, possibly due to increased exposure to pathogens during the Bronze Age. Using ancient individuals to infer local ancestry tracts in over 400,000 samples from the UK Biobank, we identify widespread differences in the distribution of Mesolithic, Neolithic and Bronze Age ancestries across Eurasia. By calculating ancestry-specific polygenic risk scores, we show that height differences between Northern and Southern Europe are associated with differential Steppe ancestry, rather than selection, and that risk alleles for mood-related phenotypes are enriched for Neolithic farmer ancestry, whereas risk alleles for diabetes and Alzheimer's disease are enriched for Western hunter-gatherer ancestry. Our results indicate that ancient selection and migration were large contributors to the distribution of phenotypic diversity in present-day Europeans.

Population genomics of post-glacial western Eurasia.

Western Eurasia witnessed several large-scale human migrations during the Holocene1-5. Here, to investigate the cross-continental effects of these migrations, we shotgun-sequenced 317 genomes-mainly from the Mesolithic and Neolithic periods-from across northern and western Eurasia. These were imputed alongside published data to obtain diploid genotypes from more than 1,600 ancient humans. Our analyses revealed a 'great divide' genomic boundary extending from the Black Sea to the Baltic. Mesolithic hunter-gatherers were highly genetically differentiated east and west of this zone, and the effect of the neolithization was equally disparate. Large-scale ancestry shifts occurred in the west as farming was introduced, including near-total replacement of hunter-gatherers in many areas, whereas no substantial ancestry shifts happened east of the zone during the same period. Similarly, relatedness decreased in the west from the Neolithic transition onwards, whereas, east of the Urals, relatedness remained high until around 4,000 BP, consistent with the persistence of localized groups of hunter-gatherers. The boundary dissolved when Yamnaya-related ancestry spread across western Eurasia around 5,000 BP, resulting in a second major turnover that reached most parts of Europe within a 1,000-year span. The genetic origin and fate of the Yamnaya have remained elusive, but we show that hunter-gatherers from the Middle Don region contributed ancestry to them. Yamnaya groups later admixed with individuals associated with the Globular Amphora culture before expanding into Europe. Similar turnovers occurred in western Siberia, where we report new genomic data from a 'Neolithic steppe' cline spanning the Siberian forest steppe to Lake Baikal. These prehistoric migrations had profound and lasting effects on the genetic diversity of Eurasian populations.

Genetic continuity and change among the Indigenous peoples of California.

Before the colonial period, California harboured more language variation than all of Europe, and linguistic and archaeological analyses have led to many hypotheses to explain this diversity1. We report genome-wide data from 79 ancient individuals from California and 40 ancient individuals from Northern Mexico dating to 7,400-200 years before present (BP). Our analyses document long-term genetic continuity between people living on the Northern Channel Islands of California and the adjacent Santa Barbara mainland coast from 7,400 years BP to modern Chumash groups represented by individuals who lived around 200 years BP. The distinctive genetic lineages that characterize present-day and ancient people from Northwest Mexico increased in frequency in Southern and Central California by 5,200 years BP, providing evidence for northward migrations that are candidates for spreading Uto-Aztecan languages before the dispersal of maize agriculture from Mexico2-4. Individuals from Baja California share more alleles with the earliest individual from Central California in the dataset than with later individuals from Central California, potentially reflecting an earlier linguistic substrate, whose impact on local ancestry was diluted by later migrations from inland regions1,5. After 1,600 years BP, ancient individuals from the Channel Islands lived in communities with effective sizes similar to those in pre-agricultural Caribbean and Patagonia, and smaller than those on the California mainland and in sampled regions of Mexico.

Extensive pedigrees reveal the social organization of a Neolithic community.

Social anthropology and ethnographic studies have described kinship systems and networks of contact and exchange in extant populations1-4. However, for prehistoric societies, these systems can be studied only indirectly from biological and cultural remains. Stable isotope data, sex and age at death can provide insights into the demographic structure of a burial community and identify local versus non-local childhood signatures, archaeogenetic data can reconstruct the biological relationships between individuals, which enables the reconstruction of pedigrees, and combined evidence informs on kinship practices and residence patterns in prehistoric societies. Here we report ancient DNA, strontium isotope and contextual data from more than 100 individuals from the site Gurgy 'les Noisats' (France), dated to the western European Neolithic around 4850-4500 BC. We find that this burial community was genetically connected by two main pedigrees, spanning seven generations, that were patrilocal and patrilineal, with evidence for female exogamy and exchange with genetically close neighbouring groups. The microdemographic structure of individuals linked and unlinked to the pedigrees reveals additional information about the social structure, living conditions and site occupation. The absence of half-siblings and the high number of adult full siblings suggest that there were stable health conditions and a supportive social network, facilitating high fertility and low mortality5. Age-structure differences and strontium isotope results by generation indicate that the site was used for just a few decades, providing new insights into shifting sedentary farming practices during the European Neolithic.

Early contact between late farming and pastoralist societies in southeastern Europe.

Archaeogenetic studies have described two main genetic turnover events in prehistoric western Eurasia: one associated with the spread of farming and a sedentary lifestyle starting around 7000-6000 BC (refs. 1-3) and a second with the expansion of pastoralist groups from the Eurasian steppes starting around 3300 BC (refs. 4,5). The period between these events saw new economies emerging on the basis of key innovations, including metallurgy, wheel and wagon and horse domestication6-9. However, what happened between the demise of the Copper Age settlements around 4250 BC and the expansion of pastoralists remains poorly understood. To address this question, we analysed genome-wide data from 135 ancient individuals from the contact zone between southeastern Europe and the northwestern Black Sea region spanning this critical time period. While we observe genetic continuity between Neolithic and Copper Age groups from major sites in the same region, from around 4500 BC on, groups from the northwestern Black Sea region carried varying amounts of mixed ancestries derived from Copper Age groups and those from the forest/steppe zones, indicating genetic and cultural contact over a period of around 1,000 years earlier than anticipated. We propose that the transfer of critical innovations between farmers and transitional foragers/herders from different ecogeographic zones during this early contact was integral to the formation, rise and expansion of pastoralist groups around 3300 BC.

Northwest African Neolithic initiated by migrants from Iberia and Levant.

In northwestern Africa, lifestyle transitioned from foraging to food production around 7,400 years ago but what sparked that change remains unclear. Archaeological data support conflicting views: (1) that migrant European Neolithic farmers brought the new way of life to North Africa1-3 or (2) that local hunter-gatherers adopted technological innovations4,5. The latter view is also supported by archaeogenetic data6. Here we fill key chronological and archaeogenetic gaps for the Maghreb, from Epipalaeolithic to Middle Neolithic, by sequencing the genomes of nine individuals (to between 45.8- and 0.2-fold genome coverage). Notably, we trace 8,000 years of population continuity and isolation from the Upper Palaeolithic, via the Epipaleolithic, to some Maghrebi Neolithic farming groups. However, remains from the earliest Neolithic contexts showed mostly European Neolithic ancestry. We suggest that farming was introduced by European migrants and was then rapidly adopted by local groups. During the Middle Neolithic a new ancestry from the Levant appears in the Maghreb, coinciding with the arrival of pastoralism in the region, and all three ancestries blend together during the Late Neolithic. Our results show ancestry shifts in the Neolithization of northwestern Africa that probably mirrored a heterogeneous economic and cultural landscape, in a more multifaceted process than observed in other regions.

"Las lanzas se convertirán irrevocablemente en arados": el Instituto agrario de Vicente Rocafuerte y José Indelicato (1838-1839) / “The spears shall become plows”: Vicente Rocafuerte and José Indelicato’s agrarian institute (1838-1839)

El artículo se propone analizar la fundación del primer Instituto agrario del Ecuador mediante una reconstitución del itinerario de su director, el médico siciliano José Indelicato, que permitirá esclarecer el doble contexto en que se creó el establecimiento: la difusión del socialismo utópico, que marcó el recorrido de Indelicato, y el auge de la agronomía como ciencia específica, que llevó a la creación de las primeras escuelas de agricultura en Europa y América a principios del siglo XIX.(AU)

This article aims to analyze the creation of the first Ecuadorian Agrarian Institute by reconstructing the travels of its director, the Sicilian doctor José Indelicato, between Europe and America, which will allow us to clarify the context of the Institute’s creation: the spread of utopian socialism, that influenced Indelicato’s trajectory, and the emergence of agronomy as a separate science that led to the creation of the first schools of agriculture in Europe and the Americas at the beginning of the 19th century.(AU)

A critical evaluation of soil salinization, waterlogging, and agricultural productive capacity in Hohokam irrigation of the Phoenix Basin, Arizona, USA.

A causal link between environmental degradation and societal collapse has captivated the imagination of generations of archaeologists, historians, and the public. At its core, it is believed that the agricultural aspirations of societies outstrip what the environment can offer. The Hohokam, who farmed the Phoenix Basin of Arizona, USA, for nearly a millennium (AD 475-1450), have been repeatedly used as an exemplar of incongruence between the environment and agricultural practices leading to crop failures and ultimately societal collapse. Contributing to the collapse narrative is crop failures that spread across the lower Salt River Valley during the late 1800s. Unacknowledged by collapse narratives is that unproductive fields were brought back to life at the start of the twentieth century with techniques not beyond the capability of the Hohokam. Hohokam farmers and their descendants maintained and prospered in the valley for more than a millennium, so the assumed unidirectionality toward degraded productive capacity warrants examination. In this article, five lines of evidence are used to assess the relationships among soil salinization, waterlogging, and agricultural productive capacity. The multistep approach reveals that available evidence fails to substantiate soil salinization and waterlogging as primary catalysts in the decline of Hohokam irrigation. As such, establishing causality between environmental factors and societal decline in the past requires multiple lines of evidence producing contextually detailed syntheses, rather than simple models.

A Conversation with James Ntambi.

An interview with James M. Ntambi, professor of biochemistry and the Katherine Berns Van Donk Steenbock Professor in Nutrition, College of Agricultural and Life Sciences, at the University of Wisconsin-Madison, took place via Zoom in April 2022. He was interviewed by Patrick J. Stover, director of the Institute for Advancing Health through Agriculture and professor of nutrition and biochemistry and biophysics at Texas A&M University. Dr. James Ntambi is a true pioneer in the field of nutritional biochemistry. He was among the very first to discover and elucidate the role that diet and nutrients play in regulating metabolism through changes in the expression of metabolic genes, focusing on the de novo lipogenesis pathways. As an African immigrant from Uganda, his love of science and his life experiences in African communities suffering from severe malnutrition molded his scientific interests at the interface of biochemistry and nutrition. Throughout his career, he has been an academic role model, a groundbreaking nutrition scientist, and an educator. His commitment to experiential learning through the many study-abroad classes he has hosted in Uganda has provided invaluable context for American students in nutrition. Dr. Ntambi's passion for education and scientific discovery is his legacy, and the field of nutrition has benefited enormously from his unique perspectives and contributions to science that are defined by his scientific curiosity, his generosity to his students and colleagues, and his life experiences. The following is an edited transcript.

Tracking the British agricultural revolution through the isotopic analysis of dated parchment.

Between the sixteenth and nineteenth century, British agriculture underwent a 'revolutionary' transformation. Yet despite over a century of research and the recognised centrality of agricultural developments to industrialisation and population growth, the character or chronology of any 'revolution' during this period remains contentious. Enquiry has been hampered by the fragmented and locally specific nature of historic accounts and the broad dating of early-modern zooarchaeological assemblages. To address this, we conducted stable isotope analysis on 658 legal documents written on sheepskin parchment; a unique biological resource that records the day, month and year of use (AD 1499 to 1969). We find these provide a high temporal resolution analysis of changing agricultural practices and episodes of disease. Most significantly, they suggest that if an 'Agricultural Revolution' occurred in livestock management, it did so from the mid-nineteenth century, in the aftermath of the Napoleonic Wars.

Population trends and the transition to agriculture: Global processes as seen from North America.

Agriculture-specifically an intensification of the production of readily stored food and its distribution-has supported an increase in the global human population throughout the Holocene. Today, with greatly accelerated of growth during recent centuries, we have reached about 8 billion people. Human skeletal and archaeobotanical remains clarify what occurred over several millennia of profound societal and population change in small-scale societies once distributed across the North American midcontinent. Stepwise, not gradual, changes in the move toward an agriculturally based life, as indicated by plant remains, left a demographic signal reflecting age-independent ([Formula: see text]) mortality as estimated from skeletons. Designated the age-independent component of the Siler model, it is tracked through the juvenility index (JI), which is increasingly being used in studies of archaeological skeletons. Usually interpreted as a fertility indicator, the JI is more responsive to age-independent mortality in societies that dominated most of human existence. In the midcontinent, the JI increased as people transitioned to a more intensive form of food production that prominently featured maize. Several centuries later, the JI declined, along with a reversion to a somewhat more diverse diet and a reduction in overall population size. Changes in age-independent mortality coincided with previously recognized increases in intergroup conflict, group movement, and pathogen exposure. Similar rises and falls in JI values have been reported for other parts of the world during the emergence of agricultural systems.

The most recent baltic sea marine hunter-gatherers? The buried individual of grave IB3 in the Suutarinniemi cemetery, Finland.

Most European hunter-gatherers slowly assimilated into farming communities during the Neolithic period. In the north these groups persisted far longer. In this paper, we present evidence from what may be one of the most recent non-agricultural sites in the region, where a marine hunter-gatherer lifestyle may have continued until as late as the 15th-16th centuries AD. The isotope composition of incremental dental analysis suggests a significant, long-term dependence on seals. This indicates that vestiges of this means of subsistence might have been present in Europe for much longer than previously thought.

Identifying the origins of obsidian artifacts in the Deh Luran Plain (Southwestern Iran) highlights community connections in the Neolithic Zagros.

Exchange networks created by Neolithic pastoral transhumance have been central to explaining the distant transport of obsidian since chemical analysis was first used to attribute Near Eastern artifacts to their volcanic origins in the 1960s. Since then, critical reassessments of floral, faunal, and chronological data have upended long-held interpretations regarding the emergence of food production and have demonstrated that far-traveled, nomadic pastoralists were more myth than reality, at least during the Neolithic. Despite debates regarding their proposed conveyance mechanisms, obsidian artifacts' transport has received relatively little attention compared with zooarchaeological and archaeobotanical lines of investigation. The rise of nondestructive and portable instruments permits entire obsidian assemblages to be traced to their sources, renewing their significance in elucidating connections among early pastoral and agricultural communities. Here we share our findings about the obsidian artifacts excavated from the sites of Ali Kosh and Chagha Sefid in the southern Zagros. In the 1960s and 1970s, 28 obsidian artifacts from the sites were destructively tested, and the remainder were sorted by color. Our results emphasize a dynamic, accelerating connectivity among the Early and Late Neolithic communities. Here we propose and support an alternative model for obsidian distribution among more settled communities. In brief, diversity in the obsidian assemblage accelerated diachronically, an invisible trend in the earlier studies. Our model of increasing population densities is supported by archaeological data and computational simulations, offering insights regarding the Neolithic Demographic Transition in the Zagros, an equivalent of which is commonly thought to have occurred around the world.

Anthropogenic legacies shaping the present composition of demarcation trees in a temperate upland field landscape in Japan.

BACKGROUND: Isolated trees are often planted in agricultural landscapes around the world, but their planting background often remains unclear. In this study, we examined the history of demarcation trees in Ibaraki Prefecture in eastern Japan by using land dispute records mainly from the early modern period (from 1600 to 1868), the Rapid Survey Map (RSM) drawn in the late nineteenth century, demarcation tree records from 2011, and interviews of the local residents. METHODS: We reviewed 39 documents on land disputes to examine the temporal and spatial usage of demarcation tree species in the early modern period. The association between the present distribution of 1486 individuals of six demarcation tree species and past land use in the RSM were analyzed with Fisher's exact test and residual analysis. In addition, we conducted interviews with 48 farmers, most of whom were over 60 years old. RESULTS: The demarcation plants in vast communal lands and village boundaries in the early modern period were mostly visually prominent tall trees, usually pines. In contrast, smaller trees were planted for demarcation in small-scale areas of forests and farmlands. Although Pourthiaea villosa (Thunb.) DC. Has been planted since the mid-eighteenth century, its planting seems to have accelerated as communal forests were divided mainly in the Meiji period (from 1868 to 1912). The present dominant state of Deutzia crenata Siebold et Zucc. in older farmlands and its ritual use, history of upland field development in the Kanto region, and ancient demarcation use in central Japan indicate its original use may date back to the medieval (from 1185 to 1600) or ancient ritsuryo period (from the seventh century to 1185). Tea (Camellia sinensis (L.) Kuntze) and mulberry (Morus spp.) individuals were considered as early modern or modern crop remnants. Results from the map-based analysis and interviews clarified the recent increase in the use of Euonymus japonicus Thunb. and Celtis sinensis Pers. for demarcation. CONCLUSIONS: Chronologically dynamic anthropogenic legacies have shaped the present agricultural landscape with different demarcation tree species. A better understanding of the dynamic transformation of vegetation under human influence adds to the historical heritage value of the landscape and should motivate its conservation.

Synthesis of palaeoecological data from the Polish Lowlands suggests heterogeneous patterns of old-growth forest loss after the Migration Period.

Human impact on Central European forests dates back thousands of years. In this study we reanalyzed 36 published pollen data sets with robust chronologies from Polish Lowlands to determine the patterns of large-scale forest decline after the Migration Period (fourth to sixth century CE). The study revealed substantial heterogeneity in the old-growth forest decline patterns. Using new high-resolution studies, we could better understand the timing of this transition related to increasing economic development. After the Migration Period, forest expansion continued until the seventh to ninth centuries cal. CE, when the dawn of Slavic culture resulted in large-scale forest decline, especially in north-western and north-central Poland. Later, forest decline was recorded mainly in north-eastern Poland and was related to Prussian settlements, including activities associated with the Teutonic Order, as well as with new settlements from the fourteenth century. The composite picture shows a varied spatio-temporal forest loss and transition towards the present-day, human activity dominated landscapes. However, some sites, such as in north-eastern Poland, are characterized by a less abrupt critical transition. The pristine nature of the oak-hornbeam forest had already been destroyed in Early Medieval times (eighth to ninth centuries cal. CE) and the potential for recovery was largely lost. Our study has confirmed previous assumptions that the decline of hornbeam across the Polish Lowlands may be an early indicator of local settlement processes, preceding severe forest loss, and establishment of permanent agriculture.